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helianthuszhu's Projects

aging-and-cr-rat-atlas icon aging-and-cr-rat-atlas

Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging” (on reviewing)

awesome-single-cell icon awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bisque icon bisque

An R toolkit for estimation of cell composition from bulk expression data

crc_meta icon crc_meta

Code and analysis results for the CRC shotgun meta-analysis

ctpathway icon ctpathway

CTpathway: a CrossTalk-based pathway enrichment analysis method.

endometriosis-scrnaseq icon endometriosis-scrnaseq

Code to reproduce analysis and figures for scRNA-seq analysis of endometriosis in Tan et al. 2021.

ggvolcano icon ggvolcano

The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient color volcano plot(`gradual_volcano`) and GO term volcano plot(`term_volcano`).

gut-ensemble-aging icon gut-ensemble-aging

Human gut microbiome aging clocks based on taxonomic and functional signatures through multi-view learning

hcc_sc_2022 icon hcc_sc_2022

HCC single cell analysis for Alvarez, Benhammou et al.

hgda icon hgda

Single-cell roadmap of human gonadal development

humanpdac icon humanpdac

single cell analysis of treatment naive and treated human PDAC

liu2020proteincell icon liu2020proteincell

Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome

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