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Jamie Sherman's Projects

combinadic icon combinadic

A class to iterate through all the combinations. It provides an alternate to nested for loops and allows for arbitrary combinations of length k

gosu-inception icon gosu-inception

Project for the speed sprint workshop [first presented at Toronto Ruby Hack Night, January 28, 2016]

gpu-topk icon gpu-topk

Efficient Top-K implementation on the GPU

htm.core icon htm.core

Actively developed Hierarchical Temporal Memory (HTM) community fork (continuation) of NuPIC. Implementation for C++ and Python

ipp2 icon ipp2

my stab at the processing pipeline tools

katikrunch icon katikrunch

This is a script for sifting interlaced peak list scans to enable searches for diagnostic ions for given PTMs (post-translational modifications). This work was done at the UCSF mass spectrometry facility.

rplidar_plot icon rplidar_plot

plotting tool for rplidar acquired data (scripts and stuff I'm processing the data with)

speed-sprint icon speed-sprint

Slides and assets for the speed sprint workshop [first presented at Toronto Ruby Hack Night, January 28, 2016]

thread_checker icon thread_checker

print the number of threads available to my process, requires OpenMP

tiffreader icon tiffreader

Program that opens an OMItiff, rips out a frame and then writes it out to a new OMItiff with 2 new custom tags. This project uses boost::gil and libtiff

uisbinmaker icon uisbinmaker

This OSX program makes a container file which will contain all the peptides relevant to computing a UIS

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