hcdenbakker Goto Github PK
Name: Henk den Bakker
Type: User
Company: Center for Food Safety, University of Georgia
Location: Griffin, GA, USA
Name: Henk den Bakker
Type: User
Company: Center for Food Safety, University of Georgia
Location: Griffin, GA, USA
ATLAS - Three commands to start analysing your metagenome data
Rust in-memory implementation of a BIGSI-like data structure
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
Experiments with using BIGSI data structure for metagenomic and QC applications
Colorid using a new BIGSI implementation
reference free variant assembly
A R script to create an ANI-based UPGMA tree from fastANI output
A fast bloom filter implemented by Rust for Python! 10x faster than pybloom!
Kraken(2) database based on the GTDB project
SNP calling pipeline using mccortex
Long-read mock community experiments
bash script to quickly produce some assembly stats
Experiments optimising python (with Cython)
Rscripts and data for analyses of microbiota found in drains in retail delis
Rapid confirmation of Salmonella spp. and subspp. from sequence data
Pan-genome wide association studies
taxonomic classifier based on the kraken2 algorithms and more
Salmonella serotyping from genome sequencing data
SeqSero2 alpha test
A k-mer based implementation of SeqSero
pipeline for download, assembly and in silico PCR for primer testing in python
Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
Pipeline to generate NGS reads from a phylogeny
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.