Comments (1)
Hi there,
Can you post the complete gene list file you are providing? I suspect there might be a malformed line. (i.e. an empty line at the end).
I created a sampel gene list file with a single line and it worked with the example.
./PrediXcan.py --predict --assoc --linear \
> --weights weights/TW_Cells_EBV-transformed_lymphocytes_0.5.db \
> --dosages genotype \
> --samples samples.txt \
> --pheno phenotype/igrowth.txt \
> --output_prefix results/Cells_EBV-transformed_lymphocytes \
> --genelist gene_list.txt
Gene list file:
chr8 ENSG00000227203.3
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