Comments (1)
The problem was two fold:
- the --ncbi option was appending to already existing files. In the next release InSilicoSeq will exit if the output faster file exists
- In case they were duplicated ids in the input fast file, the reads were written to the same temporary file but were two separate entries in the
cleanup
function. The first remove worked fine but then the function failed when trying to remove the temporary file a second time.
Thanks for finding this bug!
from insilicoseq.
Related Issues (20)
- Experimental groups HOT 2
- Consider switching to pytest HOT 1
- test failure with numpy 1.23.5 HOT 1
- coverage in chr19 of mm39 lower than other chromosomes HOT 1
- 'Seq' object has no attribute 'tomutable' HOT 2
- Bio.Alphabet has been removed from Biopython HOT 2
- Support compressed genomes HOT 1
- More options for downloading genomes HOT 1
- Is this tool still supported? HOT 1
- -u parameter should be -U
- Need help in simulation of whole metagenome data HOT 4
- Bug: local variable 'n_reads' referenced before assignment when running with "coverage" HOT 3
- temporary vcfs are not cleaned up HOT 1
- fragment length parameter not working HOT 2
- Kingdom limitation HOT 2
- Simulate (targeted) sequencing of single genes HOT 1
- Abundance file shows more genomes than are used HOT 2
- WARNING:iss.generator:--coverage_file disables --n_reads HOT 5
- Traceback Error + Missing Temporary Fastq File HOT 1
- Fragment length doesn't change the read generation behaviour HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from insilicoseq.