gstonge Goto Github PK

_gstonge.github.io

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cthredgecorr

For fast generation of edge lists from the thresholded edge correlation model.

edwardwebsite.github.io

ensemble-square

Toolkit to ensemble models and scenarios

fastsir

Fast c++ implementation of simulations for nonlinear SIR model on networks

fasttr

Python wrapper around c++ code to recover temporal information from grown trees

gcm

Group-based contagion model

grive2

Google Drive client with support for new Drive REST API and partial sync

gstonge.github.io

My personal website

heterogeneous-exposure-hons

Modules and scripts to model contagions on higher-order networks with heterogeneous exposure

heterogeneous-transmission

Code associated with the paper: Heterogeneous transmission in groups induces a superlinear force of infection

hgcm

Heterogeneous Group Compartmental Model

horgg

Higher-Order Random Graph Generator

influential-groups

Code associated with the paper: Influential groups for seeding and sustaining nonlinear contagion in heterogeneous hypergraphs

mathematics-of-epidemics-on-networks

Source code accompanying 'Mathematics of Epidemics on Networks' by Kiss, Miller, and Simon http://www.springer.com/us/book/9783319508047

netrd

pgfunk

A collection of Jupyter notebooks about Probability Generating Functions and their applications

py-factorgraph

Factor graphs and loopy belief propagation implemented in Python

rggen

Library for random graph generation.

samplableset

An efficient implementation of a set which can be randomly sampled according to the weights of the elements.

schon

Simulation of Contagions on Higher-Order Networks

scorepi

Score Epidemic Prediction Intervals

simplagion

Code associated to 'Simplicial Models of Social Contation' (https://arxiv.org/abs/1810.07031)

sir-benchmark

Benchmark tests to compare the computation time of the event-driven method and the node-based composition-rejection approach.

spreading_cr

Gillespie algorithm for the simulation of spreading processes on complex networks using a composition and rejection scheme.

tame

A collection of Jupyter notebooks about Master Equations and their applications to complex systems modeling.

urbi

Robotic programming language