gregor-mendel-institute Goto Github PK

384-snp-assay

384 SNP Illumina assay that can be used as a "universal" genotyping panel for segregating populations and fingerprinting

aamporter

Utility to batch download Adobe Creative Suite/Cloud updates and optionally import them into a Munki repository.

aradeepopsis

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images

araport-athaliana-master-accession-app

araport-athaliana-master-accession-table

Araport Community API for accessing the A.thaliana master accession list

atpolydb

Atwell et al data

bam2fastq_nextflow

bookend

End-guided RNA assembler

brat

dormancy

Dormancy Paper infos

dormancy-map

Dormancy Map

easybuild

EasyBuild - building software with ease

easybuild-easyblocks

Collection of easyblocks that implement support for building and installing software with EasyBuild.

easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

easybuild-framework

EasyBuild is a software installation framework in Python that allows you to install software in a structured and robust way.

env_init

Linux Environment Initialisation scripts for Scientific Computing on HPC and Workstation Deployments

flask-oidc

OpenID Connect support for Flask

galaxy-guide

Guide for Galaxy at the GMI

gwa-portal

Web-app to store an display GWAS studies

gwaportal-gwas-server

Server for accessing HDF5 files and python analysis from GWA-Portal

gwaportal-hpc-pipeline

HPC pipeline for GWA-Portal

gwapp

gwar

A collection of R functions to conduct downstream GWAS analysis for arabidopsis thaliana.

gwas-nf

Nextflow pipeline to run genome wide association studies using limix

gwas_flow

GPU accelerated GWAS framework based on TensorFlow

gwas_workshop

basic GWAS workshop in jupyter notebook form

iap-phenopipe

The Integrated Analysis Platform for high-throughput plant image analysis adapted for the Phenopipe System

ibtop

monitor InfiniBand usage by job or host

image-jenkins

Jenkins CasC container image

isoseq3