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amphibianvalue

amphibianvalue2

bd-il

behavior

bsal

bsal_invasion

direnzo_et_al_ecoapps_inpress

Contains code to format data, create figures, run model, and simulate data for disease structured N-mixture model

direnzo_etal_eco-evo

direnzolabpolicy

This repository will help guide and outline expectations I have of graduate students

disease_dynamics_tropics

eemb595te

Theoretical Ecology EEMB 595TE UCSB Spring 2018

epizootic

how_to_for_grad_school

This repository is intended for 2 audiences: (1) Undergraduates that are interested in attending graduate school and (2) Professors that are interested in helping their students understand the transition from undergrad to grad school

imperfectpathogendetection_mees

This code supplied the R code, JAGS models, and model output used in DiRenzo et al. 2017, published in Methods in Ecology and Evolution.

intro-spatial-r

This repo contains all the scripts and materials used for the student workshop "Using R to Model, Manipulate, and Manage Spatial Data"

ipm_for_parasites

Code for IPM host-parasite analysis

modeling-and-simulation-of-wildlife-disease-dynamics

occupancy-simulations

Code simulates and analyzes data for species that range in occupancy and detection probability

osrr_course

The Open Science and Reproducible Research course

semester-biology

sesyncbayes

Course materials for the SESYNC Bayesian modeling for ecologists and social scientists short course.

stage-structured-jolly-seber-model

To estimate survival and population growth for a population of marked individuals that differ in infection status

tadpole_occupancy

Occupancy analysis used in DiRenzo GV, Che-Castaldo C, Rugenski A, Brenes R, Whiles MR, Pringle CM, Kilham SS, Lips KR (2016) Disassembly of a tadpole community by a multi-host fungal pathogen with limited evidence of recovery. Ecological Applications, online in advance of print. http://dx.doi.org/10.1002/eap.1443

teachipms

Modules with presentations and demonstration code for teaching Integral Projection Models