Comments (5)
SHuang-Broad
commented on June 16, 2024
This is possibly related to #764
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AndrewCarroll
commented on June 16, 2024
Thank you for the report. We think the two items are linked and we are working on a patch that we plan to release to cover the issue.
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kishwarshafin
commented on June 16, 2024
hi @SHuang-Broad ,
Please try the following docker that has the patch incorporated that should fix your issue:
docker pull google/deepvariant:CL602468145
docker pull google/deepvariant:CL602468145-gpufrom deepvariant.
SHuang-Broad
commented on June 16, 2024
Thanks @kishwarshafin . Let me try this out and report back.
from deepvariant.
kishwarshafin
commented on June 16, 2024
@SHuang-Broad , Can you please try the v1.6.1 docker? If the issue isn't resolved, please feel free to reopen this bug.
from deepvariant.
Related Issues (20)
- Dynamic cast failed HOT 6
- question for INDEL variant calling HOT 14
- Question about the time it takes for VC analysis HOT 5
- Merging vcf files error with glnexus:v1.2.7 HOT 6
- haploid contigs and PAR region options for DeepTrio HOT 13
- [E::vcf_parse_format] Incorrect number of FORMAT fields at NC_059157.1:24900 HOT 2
- postprocess_variants: Found multiple file patterns in input filename space HOT 8
- Issues with Incompatible TensorRT libraries in docker image google/deepvariant:latest-gpu and google/deepvariant:1.6.1-gpu HOT 9
- CUDA_ERROR_NO_DEVICE: no CUDA-capable device is detected HOT 9
- Info ONT R10.4.1 data HOT 3
- error while running deepvariant with a bam file with phasing information
- Error while using deepvariant with a bam file that is phased HOT 4
- Homozygous GT value while IGV shows otherwise HOT 8
- Fix male VCF after calling without --haploid_contigs="chrX,chrY" and/or --par_regions_bed parameters HOT 2
- gvcf with true depth and not (only) min_dp HOT 5
- any progress on somatic SNV calling? HOT 1
- Use haplotagged bam file with WES model type HOT 6
- docker: invalid reference format. HOT 6
- google/deepvariant:1.6.1 docker says version 1.6.0 HOT 3
- A timeout error occurs HOT 1
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