Missing majority of ZMWs after running lima to search for adapters about deepconsensus HOT 4 CLOSED

Hi @rosspdu

Did you run DeepConsensus prior to lima or did you run lima first? If you ran DeepConsensus first, would you be able to reverse the order (run lima and then DeepConsensus) and let us know if this changes the amount of reads you see?

Thank you,
Andrew

from deepconsensus.

Hi @rosspdu

Did you run DeepConsensus prior to lima or did you run lima first? If you ran DeepConsensus first, would you be able to reverse the order (run lima and then DeepConsensus) and let us know if this changes the amount of reads you see?

Thank you, Andrew

Hello Andrew,

Thank you for your quick response. Yes, I ran the DeepConsensus first before lima. And yes, I can try reversing the order of run and will let update you.

Cheers,
Ross

from deepconsensus.

Hi @rosspdu ,
Do you have any updates for us? If not, I'll plan to close this issue in the next few days. Thank you!

from deepconsensus.

from deepconsensus.