Change X axis order with fantaxtic_bar about fantaxtic HOT 3 CLOSED

Hi Pau,

Thanks for using fantaxtic! fantaxtic_bar has unfortunately been deprecated. However, all its functionality and more has been reimplemented in plot_nested_bar - have a look at the new documentation on the GitHub page.

In plot_nested_bar, you can supply a character vector with the sample names (from sample_names(ps)) in the desired x-axis order to the sample_order argument.

If you prefer to use fantaxtic_bar, I believe it should be possible to change to x-axis order by setting order_alg = 'as.is', which should plot your samples along the x-axis in the order in which they are encountered in the data. I do really recommend to use the updated functionality, as I can't guarantee that fantaxtic_bar still works as intended.

Let me know if this has resolved your issue.

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Thank you, I'm really enjoying this new function. My issue now is I need to specify colors for each order that is graphed so I can compare across samples. I tried to do this but it just used its own default colors:

plot_nested_bar(ps_obj = top_asv$ps_obj, top_level = "Phylum",
nested_level = "Family",
palette=c(Frankiales = "paleturquoise1",
Micrococcales = "turquoise2",
Microtrichales = "turquoise3",
Bacteroidales = "gold",
Cytophagales = "goldenrod2",
Flavobacteriales = "goldenrod3",
Burkholderiales = "mistyrose",
Enterobacterales = "pink",
Pseudomonadales = "palevioletred1",
Rhizobiales = "palevioletred3",
Sphingmonadales = "maroon1",
Rhodobacterales = "violetred4",
Xanthomonadales = "palevioletred4",
Verrucomicrobiota = "black"))

from fantaxtic.

from fantaxtic.