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cmdcolin avatar cmdcolin commented on August 15, 2024

The indexToChr property might help (in your code you can see it is the sixth SQ line the first line was not SQ but it should be easier to use indextochr) https://github.com/GMOD/bam-js/blob/master/test/bai.test.js#L66

Also try getReadBases https://github.com/GMOD/bam-js/blob/master/test/bai.test.js#L101

I may try to redesign the record class to make it easier to accomplish these tasks as it is a bit opaque right now but if you look at the test code you can see some example usage

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lidaof avatar lidaof commented on August 15, 2024

Hi @cmdcolin , this is very clear after your answer :)
I should check the test folder earlier :)
Thank you!

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