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gmgitx avatar gmgitx commented on September 4, 2024

Yes,我就是工程师口中的General computer。

Java
Conda
BigDataScript
Pipeline
Dependencies
Genome data

#########################下面一一进行,#############

- Java, Conda不必

- BigDataScript

😅解压之后是隐藏文件以为没解压

Add export PATH=$PATH:$HOME/.bds to your $HOME/.bashrc.

这里,
😕这行代码的加入位置?
😕这个加法和通常也不太一样?

- Dependencies

bash install_dependencies.sh
#坐等。紧张,饥饿。泡一杯燕麦,嘴上悠悠的喝,内心绷紧的等。:neutral_face::neutral_face::neutral_face:
#终于,恭喜我:

...
== Installing dependencies has been successfully done. ==

- Genome data

...
Creating species file... (/.../.../.../.../hg19db1/bds_atac_species.conf)
=== Genome data (hg19) has been successfully installed. ===

########################### ### 先试一个样本的
bds atac.bds -species hg19 -nth [NUM_THREADS] -fastq1_1 [READ1] -fastq1_2 [READ2]

from blog_natural_science.

gmgitx avatar gmgitx commented on September 4, 2024

前沿pipeline的旧doc

from blog_natural_science.

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