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Graham McVicker's Projects

bkgd icon bkgd

code for estimating the effect of background selection

check_fastq icon check_fastq

Utilities for checking the integrity of and repairing fastq files

cht icon cht

Combined Haplotype Test

dmel icon dmel

scripts for D. melanogaster chromatin projects

draw_genes icon draw_genes

A flexible python program for generating figures from regions of the genome.

genome icon genome

Python library and scripts for retrieval and storage of genomics data in HDF5 format

impute icon impute

scripts for converting imputed SNP data to HDF5

varca icon varca

Use an ensemble of variant callers to call variants in ATAC-seq data

wasp icon wasp

WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery

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