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  • 👋 Hi, I’m @gmaikelc
  • 👀 I’m interested in Cheminformatics, Artificial Intelligence
  • 🌱 I’m also connecting Molecular Dynamics, Docking and Machine Learning in Material Sciences and Chemistry/Biology
  • 💞️ I’m working in Polymer/Materials Informatics
  • 📫 How to reach me: [email protected]

Gerardo Casanola's Projects

aop-cop-path-extractor icon aop-cop-path-extractor

Construct Adverse/Clinical Outcome Pathway queries and extract path information from ROBOKOP or other Biomedical Knowledge Graphs

datapreprocessing_chem icon datapreprocessing_chem

Describes the steps for develop the preprocessing of data in a chemoinformatics study with python

dataviz icon dataviz

A book covering the fundamentals of data visualization

deeplearningexamples icon deeplearningexamples

State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.

dgl-lifesci icon dgl-lifesci

Python package for graph neural networks in chemistry and biology

dl-chem-101 icon dl-chem-101

Example implementations of common machine learning projects in chemistry.

dynamicbind icon dynamicbind

repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model

emolfrag icon emolfrag

eMolFrag is a molecular fragmentation tool based on BRICS algorithm written in Python.

enqrasar icon enqrasar

Predict Skin Irritation based on pIC50 using command-line tool application

featureimportance icon featureimportance

Code for "Permutation Feature Importance for ML Interpretability from Scratch"

fmeval icon fmeval

Foundation Model Evaluations Library

free_energy_landscape-md icon free_energy_landscape-md

A Python package to generate free energy landscape (FEL) of molecular dynamics (MD) trajectory obtained from GROMACS. It also extracts the time frames corresponding to the minima regions in the FEL.

gmtames icon gmtames

A grouped multitask deep learning approach for the prediction of strain-specific Ames mutagenicity

gpu4pyscf icon gpu4pyscf

A plugin to use Nvidia GPU in PySCF package

hoomd-tf icon hoomd-tf

A plugin that allows the use of Tensorflow in Hoomd-Blue for GPU-accelerated ML+MD

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