Name: Glenn Hickey
Type: User
Company: Arenaria
Location: Canada
Blog: https://scholar.google.ca/citations?user=YM0669QAAAAJ&hl=en
I am a freelance software consultant, specializing in comparative genomics research. I work primarily on open source projects using C++ and Python, such as Cactus and vg. I have a PhD in Computer Science from McGill University.
My consulting company, Arenaria, has been in business since 2015. If you are interested in working together feel free to contact me (my first name dot my last name @arenaria.ca).
cactus
Official home of genome aligner based upon notion of Cactus graphs
cactus2hal
Convert progressive cactus database into a hal file
charliesandbox
A place where random projects live
context
Generalization of Pair-HMM sequence aligner that uses a Pair-Tree Adjoining Grammar (TAG) for context sensitivity.
contigsim
Simulate the evolution of a genome as represented by a pool of contigs
corg
Tool to merge two vg graphs into a core graph
gbwtgraph
GBWT-based handle graph
gcsa2
BWT-based index for graphs
gfa-spec
Graphical Fragment Assembly (GFA) Format Specification
gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
giraffe-dv-wdl
WDL scripts for the Giraffe/DeepVariant variant calling pipeline
glenn2vcf
Convert Glenn's internal graph variant format to VCF
glennhickey
glennhickey.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
hal2sg
Prototype code for converting HAL to Sequence/String/Side/? Graph
hgsvc
building variation graphs from hgsvc data
hgvm
hgvm-graph-bakeoff-evaluations
All code for reproducing reference graph bakeoff results
jsb
jenkins sandbox for playing with ci stuff
local-browser
recipe to make local ucsc genome browser instance for debugging hal / snake tracks
mmmultimap
memory mapped multimap based on an in-place parallel binary sort and succinct indexes
paf2lastz
Convert PAF with cg cigars to LASTZ cigars
pg-pathcomp
pg-stuff
Helper scripts used to build and debug Cactus pangenomes
progressivecactus
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
protobuf-zerocopy-compression
Some Compression streams (gzip, snappy, lz4) implementing the ZeroCopy Interface from Google(TM) protobuf 2.4.1
red
Fork of RED (REpeat Detector)
repeatmaskerpipeline
rgfa
keep track of some scripts used to evaluate rgfa stuff
server
A reference implementation of the APIs defined in the schemas repository.
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
