Kelly, P. A., McHugo, G. P., Scaife, C., Peters, S., Stevenson, M. L., McKay, J. S., MacHugh, D. E., Saez, I. L., & Breathnach, R. (2024). Unveiling the role of endoplasmic reticulum stress pathways in canine demodicosis. Parasite Immunology, 46(4), e13033. doi:10.1111/pim.13033.

Ward, J. A., Ng’ang’a, S. I., Randhawa, I. A. S., McHugo, G. P., O’Grady, J. F., Flórez, J. M., Browne, J. A., Pérez O’Brien, A. M., Landaeta-Hernández, A. J., Garcia, J. F., Sonstegard, T. S., Frantz, L. A. F., Salter-Townshend, M., & MacHugh, D. E. (2024). Genomic insights into the population history and adaptive traits of Latin American Criollo cattle. Royal Society Open Science, 11(3), 231388. doi:10.1098/rsos.231388.

Hall, T. J., McHugo, G. P., Mullen, M. P., Ward, J. A., Killick, K. E., Browne, J. A., Gordon, S. V., & MacHugh, D. E. (2023). Integrative and comparative genomic analyses of mammalian macrophage responses to intracellular mycobacterial pathogens. Tuberculosis, 102453. doi:10.1016/j.tube.2023.102453.

Bhat, S. A., Elnaggar, M., Hall, T. J., McHugo, G. P., Reid, C., MacHugh, D. E., & Meade, K. G. (2023). Preferential differential gene expression within the WC1.1+ γδ T cell compartment in cattle naturally infected with Mycobacterium bovis. Frontiers in Immunology, 14, 1265038. doi:10.3389/fimmu.2023.1265038.

Correia, C. N., McHugo, G. P., Browne, J. A., McLoughlin, K. E., Nalpas, N. C., Magee, D. A., Whelan, A. O., Villarreal-Ramos, B., Vordermeier, H. M., Gormley, E., Gordon, S. V., & MacHugh, D. E. (2022). High-resolution transcriptomics of bovine purified protein derivative-stimulated peripheral blood from cattle infected with Mycobacterium bovis across an experimental time course. Tuberculosis, 136, 102235. doi:10.1016/j.tube.2022.102235.

Ward, J. A., McHugo, G. P., Dover, M. J., Hall, T. J., Ng’ang’a, S. I., Sonstegard, T. S., Bradley, D. G., Frantz, L. A. F., Salter-Townshend, M., & MacHugh, D. E. (2022). Genome-wide local ancestry and evidence for mitonuclear coadaptation in African hybrid cattle populations. iScience, 25(7), 104672. doi:10.1016/j.isci.2022.104672.

Hall, T. J., Mullen, M. P., McHugo, G. P., Killick, K. E., Ring, S. C., Berry, D. P., Correia, C. N., Browne, J. A., Gordon, S. V., & MacHugh, D. E. (2021). Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. BMC Genomics, 22, 343. doi:10.1186/s12864-021-07643-w.

McHugo, G. P., Dover, M. J., & MacHugh, D. E. (2019). Unlocking the origins and biology of domestic animals using ancient DNA and paleogenomics. BMC Biology, 17, 98. doi:10.1186/s12915-019-0724-7.

McHugo, G. P., Browett, S., Randhawa, I. A. S., Howard, D. J., Mullen, M. P., Richardson, I. W., Park, S. D. E., Magee, D. A., Scraggs, E., Dover, M. J., Correia, C. N., Hanrahan, J. P., & MacHugh, D. E. (2019). A population genomics analysis of the native Irish Galway sheep breed. Frontiers in Genetics, 10, 927. doi:10.3389/fgene.2019.00927.

Browett, S., McHugo, G., Richardson, I. W., Magee, D. A., Park, S. D. E., Fahey, A. G., Kearney, J. F., Correia, C. N., Randhawa, I. A. S., & MacHugh, D. E. (2018). Genomic characterisation of the indigenous Irish Kerry cattle breed. Frontiers in Genetics, 9, 51. doi:10.3389/fgene.2018.00051.