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academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

adage

This is the repository for ADAGE (Analysis using Denoising Autoencoders for Gene Expression)

adagepath

This repository is the home to ADAGEpath R package

big-little-data

compendia of microbial gene expression

calm-genomes

Comparative genomic analysis for S. epidermidis strains used in CALM

calm-nf

Nextflow pipeline to process CALM data

community-profiling-sputum

Microbial community profiling via amplicon sequencing from CF sputum

expandar

R Package for Interactive Panel Data Exploration

georgiadoing.github.io

guide-finder

Pan-bacterial, genome-wide guide designer

latent-space-sputum

An assessment of transforming complex P.a. gene expression into autoencoder latent space

model-microbes

name-drop-pa

For converting PAO1 and PA14 gene names to numbers and back

openai-quickstart-node

Node.js example app from the OpenAI API quickstart tutorial

pa-salmon

run salmon on pa sequencing

pa-seq-compendia

To build compendia of publicly available RNA-seq data for P. aeruginosa, specifically.

pa-sputum-transcriptome

pavo

tools for the analysis of color data in R

radiant-citsci

Business analytics using R and Shiny. The radiant app combines the menus from radiant.data, radiant.design, radiant.basics, radiant.model, and radiant.multivariate.

s.epi-crispri-and-rna-seq

seqadage

shiny_r_club

sraprocessingpipeline

sraProcessingPipeline