investigate what package, when updated by poetry, breaks the usage of schemasheets CLIs about mixs6.2_release_candidate HOT 5 CLOSED

pyproject.toml says

linkml = "^1.5.3"

make all works after a fresh download and poetry install

from mixs6.2_release_candidate.

updating pyproject.toml to

linkml = "^1.5.6"

followed by linkml = "^1.5.3"

• Updating linkml-runtime (1.5.5 -> 1.5.7)
• Updating linkml (1.5.6 -> 1.5.8)

oops, maybe I should have set an upper limit.

from mixs6.2_release_candidate.

make squeaky-clean all

still works

from mixs6.2_release_candidate.

I individually updated all of the packages that I recognized as being essential for the build, which continued to work.

After that I did global poetry update which caused

• Removing decorator (5.1.1)
• Updating zipp (3.16.2 -> 3.17.0)
• Updating exceptiongroup (1.1.2 -> 1.1.3)
• Updating pluggy (1.2.0 -> 1.3.0)
• Updating rpds-py (0.9.2 -> 0.10.3)
• Updating typing-extensions (4.7.1 -> 4.8.0)
• Updating urllib3 (2.0.4 -> 2.0.5)
• Installing annotated-types (0.5.0)
• Updating click (8.1.6 -> 8.1.7)
• Installing pydantic-core (2.10.1)
• Updating pytest (7.4.0 -> 7.4.2)
• Updating rdflib (6.2.0 -> 7.0.0)
• Updating referencing (0.30.0 -> 0.30.2)
• Updating google-auth (2.17.3 -> 2.23.1)
• Updating protobuf (4.23.4 -> 4.24.3)
• Updating pydantic (1.10.12 -> 2.4.2)
• Updating regex (2023.6.3 -> 2023.8.8)
• Updating soupsieve (2.4.1 -> 2.5)
• Updating google-auth-oauthlib (1.0.0 -> 1.1.0)
• Updating jsonschema (4.18.4 -> 4.19.1)
• Updating pytz (2023.3 -> 2023.3.post1)
• Updating setuptools (68.0.0 -> 68.2.2)
• Updating smmap (5.0.0 -> 5.0.1)
• Updating google-api-core (2.11.1 -> 2.12.0)
• Updating google-auth-httplib2 (0.1.0 -> 0.1.1)
• Updating gspread (5.10.0 -> 5.11.2)
• Updating jsonpath-ng (1.5.3 -> 1.6.0)
• Updating ruamel-yaml (0.17.32 -> 0.17.33)
• Updating sqlalchemy (2.0.19 -> 2.0.21)
• Updating tqdm (4.65.0 -> 4.66.1)
• Updating airium (0.2.5 -> 0.2.6)
• Updating gitpython (3.1.32 -> 3.1.37)
• Updating google-api-python-client (2.95.0 -> 2.101.0)
• Updating rich (13.5.2 -> 13.5.3)
• Updating validators (0.20.0 -> 0.22.0)
• Updating joblib (1.3.1 -> 1.3.2)
• Updating pronto (2.5.4 -> 2.5.5)

After that,

make all ->

ImportError: cannot import name 'ENCODERS_BY_TYPE' from 'pydantic.json' (/home/mark/.cache/pypoetry/virtualenvs/mixs-envo-struct-knowl-extraction-gO904ZOL-py3.9/lib/python3.9/site-packages/pydantic/json.py)

from mixs6.2_release_candidate.

starting over with just those packages that are required to do make all

name : linkml-runtime
version : 1.5.5

from mixs6.2_release_candidate.