Related Issues (20)
- Tb bam index doesnโt match bam file
- Add Nanopore test data
- Add QC for Nanopore data
- Check compatibility with Nanopore HOT 1
- Add profile for Enterococcus faecalis
- Add profile for Enterococcus faecium
- Add profile for Streptococcus pyogenes HOT 1
- Add profile for Acinetobacter baumannii
- Add profile for Pseudomonas aeruginosa
- Fix mlst bug
- Tb bam and index files not working in igv
- Include sample_id and sample_name
- Improve the pipeline description
- Makefile core usage argument
- Additional requirements
- Add profile for Borrelia
- Poor performance of Serotypefinder using fastq files as input
- .cdmpy output needs full filepath for qc_result.json file
- Changes to TbProfiler changed their output format with version 6 HOT 1
- Update TbProfiler to version 6.3
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