Is it okay if I make a bioconda package for scramble? about scramble HOT 10 CLOSED

Hi, I was wondering if you have a timeline for making a release. The package recipe is almost finished (https://github.com/bcbio/bioconda-recipes/tree/scramble-recipe/recipes/scramble) and we are ready to submit it to Bioconda as soon as a GitHub release of Scramble is published. It doesn't have to be polished (using the current latest commit on master is fine) since it is fairly easy to update the package when new versions come out. We are looking forward to making Scramble easier to install and use.

from scramble.

@hackdna sorry I missed that before. here you go: https://github.com/GeneDx/scramble/releases/tag/v1.0.1

from scramble.

Thanks for your help. Conda package v1.0.1 has been published: https://anaconda.org/bioconda/scramble

Some badges to add to README.md: https://anaconda.org/bioconda/scramble/badges

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Yes, it is okay to make a bioconda package for scramble (and would be much appreciated), but I'm afraid we can't budge on the license. We're also in the process of updating scramble to have clipped read deletion calling and to output VCFs, so if you wait a few weeks, those features should be available.

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Hi Rebecca,

Great! I'll get on making the package. No worries about budging on the license, just thought I'd ask.

from scramble.

Hi Rebecca, Bioconda does not allow downloading the source code directly from a VCS for building packages (https://bioconda.github.io/contributor/linting.html#policy). Would you mind creating a release?

from scramble.

Thanks +1 to what Ilya said-- we can make the package but we need a release version to make it against. It is nice because once we do it that way, bioconda will pick up all subsequent releases you all make automatically so you'll always have an up to date version in bioconda.

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Hi @hackdna and @roryk, thanks so much for the interest and the help getting scramble into bioconda. We will make a release and let you know.

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@hackdna @roryk here you go: https://github.com/GeneDx/scramble/releases/tag/v1.0.0

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@mfinelli Thanks very much! Could you create a release v1.0.1 to match the cluster_identifier version (#10)?

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