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adam icon adam

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

adam-ibs icon adam-ibs

Ports the IBS/MDS/IBD functionality of Plink to Spark / ADAM

adamcloud icon adamcloud

Portable cloud infrastructure for a genomic transformation pipeline using Adam

avocado icon avocado

A Variant Caller, Distributed. Apache 2 licensed.

bdg-formats icon bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

docker-ubuntu-snap icon docker-ubuntu-snap

(Genomics) Dockerfile for running Snap (Scalable Nucleotide Alignment Program) - http://snap.cs.berkeley.edu/

example-avro-parquet-spark icon example-avro-parquet-spark

Ce projet est un exemple démontrant premièrement comment convertir un fichier Avro en classes Java. Ensuite ce projet montre comment persister des données à l'aide de Parquet. Pour terminer, ce projet démontre comment sélectionner des données depuis les fichiers Parquets à l'aide de Spark.

plink icon plink

(Genomics) Dockerfile for running plink v1 - http://pngu.mgh.harvard.edu/~purcell/plink/

plink-ng icon plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).

sample-hbase-app icon sample-hbase-app

Sample Java application that communicates with HBase via the HBase API.

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