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Hi there 👋

I am a computational biologist - originally trained as molecular biologist - who started learning data analysis in R in 2017. My current areas of expertise include transcriptomics (bulk and single cell), translatomics, neurodevelopmental disorders, neurodegenerative diseases, genome editing, and stem cell biology. I am particularly passionate about data visualization.

Since early 2021 I started honing my skills as a package developer. So fare I have released seven R packages in the wild:

  • 🧠 {coldcuts} - draw and render neuroanatomical segmentations in 2D and 3D
  • 🍳 {oveRlay} - annotate 2D scatterplots with overlay polygons
  • 🎨 {swatcheR} - generate color swatches from pictures
  • 🦜 {alamak} - let Pixel Pals handle your errors
  • 🗺️ {borges} - antique cartographic style 2D point clouds (UMAP, tSNE and the like)
  • 🧫 {cellula} - pipeline with wrappers to many single cell RNA-seq analysis methods
  • 🏢 {HDB} - a geometric test to detect batch effects in single cell RNA-seq

hexwall

with hopefully more to come.

🛠 I am currently learning three.js, a little bit of Python on the side, and Arduino physical computing as a hobby.

Giuseppe D'Agostino's Projects

alamak icon alamak

alamak catches your errors and lets a pixel pal tell you all about it.

borges icon borges

Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data

cellula icon cellula

Simple implementation of different single cell RNA-seq methods

coldcuts icon coldcuts

coldcuts is an R package to automatically generate and plot segmentation drawings in R

destiny icon destiny

R package for single cell and other data analysis using diffusion maps

hexdimred icon hexdimred

Hexagonal binning for dimensionality reduction plots

il11_lung icon il11_lung

markdowns for the analysis on the manuscript " IL-11 is a therapeutic target in idiopathic pulmonary fibrosis"

musicbox icon musicbox

Experiments with interactive audio loops in R

overlay icon overlay

Annotate 2D point clouds using overlay polygons

rboards icon rboards

Create simple status boards for project management

swatcher icon swatcher

Fast automatic selection of color swatches from images

tscan icon tscan

Clone of the Bioconductor repository for the TSCAN package.

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