Missing include flags in makefile or incorrect include statements about gbpcode HOT 3 OPEN

The compile error with the missing header file should be fixed now.

As for the linking error (with gbpMCMC) ... are you sure that you have gsl in your LD_LIBRARY_PATH or have set the environment variable GBP_GSL_DIR in your .bashrc.myCode appropriately (and have made sure to source it)?

from gbpcode.

The linking error is a result of missing -libgsl passed as compile options.

Standard make outputs the following

Compile and linking parameters:

CC =g++ -std=c++98

CPPFLAGS= -DUSE_GETLINE=0 -I/gbpCode/myInclude/ -DUSE_CFITSIO=0 -DUSE_HDF5=0 -DUSE_GDLIB=0 -DUSE_CUDA=0 -DUSE_DEBUGGER=0 -DUSE_VALGRIND=0 -DUSE_GSL=0 -DUSE_FFTW=0 -DUSE_SPRNG=0 -DUSE_MPI=0 -DUSE_MPI_IO=0 -O2 -DGBP_DATA_DIR=/gbpCode/myData/"

LDFLAGS= -L/gbpCode/myLib/

Shouldn't the default LDFLAGS have -lgsl and -lgslcblas? Adjusting the Makefile.mylocal did not alleviate the problem however, removing the USE_GSL check in Makefile.libs so that the code always adds a -lgsl -lgslcblas -lm by default worked.

from gbpcode.

That's because you're setting USE_GSL=0 somehow. It should be USE_GSL=1

from gbpcode.