Comments (7)
jsgounot
commented on August 17, 2024
One of the simple changes could be to replace the current logger.error to logger.warning such as this one.
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gbouras13
commented on August 17, 2024
Hi @jsgounot ,
Agreed and this will be an easy request. Iām a bit short on software maintenance/improvement time right now but will get to it in a few weeks probably.
George
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jsgounot
commented on August 17, 2024
Coll thanks!
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KR0manova
commented on August 17, 2024
Seconding this request, would be fantastic! Thank you for this tool.
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gbouras13
commented on August 17, 2024
Hi @jsgounot ,
I've implemented a fix for this (looks like #74 had the same bug/request). So in the next version once released, if you have no BLAST hits and specified -a none, then dnaapler will behave as you wish.
George
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jsgounot
commented on August 17, 2024
Ok, I'll wait for the release then. Thanks.
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gbouras13
commented on August 17, 2024
available in v0.8.0
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Related Issues (20)
- fix start at pat gene instead of dnaA HOT 5
- add ignore option as well as all databases option HOT 12
- Error with dnaapler all on bacterial chromosome and plasmids HOT 3
- [Question] Do reoriented contigs match the strandedness of the balst result? HOT 4
- Improve autocomplete HOT 4
- [JOSS Review] - Text corrections and suggestions HOT 3
- [JOSS Review] - Documentation HOT 4
- [JOSS Review] Typos in CONTRIBUTING.md HOT 2
- [JOSS Review] Authorship list HOT 2
- [JOSS Review] Installation instructions in the readthedocs HOT 2
- [JOSS Review] Clarifying the fallback behaviour from BLAST to pyrodigal HOT 8
- Dnaapler rotates non-circularized contigs HOT 3
- Option to specify start gene type in all mode HOT 3
- Add option to annotate fasta headers with Gene_Reoriented HOT 2
- min and max length criteria HOT 1
- dnaapler all --autocomplete not running HOT 4
- Add archaea support HOT 7
- Error with subset of samples in pipeline HOT 1
- Support reorientation of as many contigs as possible
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