Comments (1)
Hi @gevro, sorry for the lag, we don't monitor the issues in this repository. GATK4 is definitely reliable and I would encourage you to use it for any new work. However, our production pipeline is very slow to take in updates, because upgrading it triggers the reprocessing of some very large datasets internally, so we don't do it unless it's really necessary.
from five-dollar-genome-analysis-pipeline.
Related Issues (16)
- Hg37 support HOT 2
- Fail if empty ref_alt ? HOT 1
- what's "File?" ? Is that a coding bug? HOT 1
- what is "five-dollar- genome-analysis" mean? HOT 1
- BamToGvcf.wdl typo in import URI HOT 1
- Qc.CheckPreValidation runtime section has duplicate 'docker' keys HOT 1
- What is "fingerprint_genotypes_file" HOT 1
- BamToGvcf.wdl typo in local import HOT 1
- Localization can be made optional for more stages.
- The flow with example files fails HOT 3
- sleep after creating files HOT 1
- PCR INDEL model
- Docker Image HOT 1
- start fastq with gatk4
- SamtoFastq errror when running locally HOT 2
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from five-dollar-genome-analysis-pipeline.