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Timothy Shaw's Projects

cocke-younger-kasami icon cocke-younger-kasami

C++ implementation of the CYK algorithm. Grammar specific speed-ups were incorporated in the code.

drppm icon drppm

Integrated software for processing omics data.

ignore icon ignore

JUMPg is a proteogenomics software pipeline for analyzing large mass spectrometry (MS) and functional genomics datasets. The pipeline includes customized database building, tag-based database search, peptide-spectrum match filtering, and data visualization. The program is written in perl and is designed for high performance parallel computing systems.

jumpg icon jumpg

For future update on JUMPg, please goto https://github.com/liyuxin-bioinformatics/JUMPg

netbid icon netbid

Data-driven Network-based Bayesian Inference of Drivers

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