gao-lab Goto Github PK

carmen

The Standalone package of CARMEN

cell_blast

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

cell_blast-notebooks

Jupyter notebooks for Cell BLAST

cope

Context-Oriented Predictor for variant Effects

cpc2_standalone

Official repo for the standalone package of Coding Potential Calculator (CPC) 2.

epooling

Expectation pooling: An effective and interpretable method of pooling for predicting DNA-protein binding

funtfbs

A package to identify functional TFBS

glue

Graph-linked unified embedding for single-cell multi-omics data integration

glue-bioconda-recipes

Conda recipes of GLUE for the bioconda channel.

guideline-for-computational-biology-and-bioinformatics

here

Human Embryonic RNA Editome

kernel-to-pwm

lost_and_found

markonv

core code of Markonv layer and Markonv operator

markonv_figures

Markonv: a novel convolutional layer for identifying inter-positional correlations effectively and efficiently This is the repository for reproducing figures and tables in the paper.

projectmanagementworkshop

This is a demo repo for project management in Technology Workshop 2023

reva-data_source_code

ribocalc

RiboCalc data and script

scrnaseq_benchmark

Bench-marking classification tools for scRNA-seq data

seers

sgrna

A pipeline for sgRNA design

slat

Spatial-Linked Alignment Tool

sle-immuneatlas

scRNA and scVDJ analysis for SLE samples

sven

Quantifying the regulatory potential of genetic variants via a hybrid sequence-oriented model

vconv

An implementation of vConv layer.

vconv-figures_and_tables

The repository for reproducing figures and tables in the vConv paper