gangwug Goto Github PK
Name: Gang Wu
Type: User
Gang Wu's Projects
affyarrayexp
The general pipeline of extracting expression values from microarray cel files
ccmapp
The shiny app of drawing the heatmap of clock correlation matrix
distancecor
Perform permutation-test of distance correlation coefficient
drawcirheatmap
The code of drawing the heatmap of rhythmical profiles of circadian-omics data
geneoverlapapp
get the overlapped genes between two gene lists
impute
A github copy of impute package from Bioconductor
limma
A github copy of limma package from Bioconductor
ltmpy
An in silico genome-wide screen for circadian clock strength (A python version)
ltmr
An in silico genome-wide screen for circadian clock strength
mantel_test_py
A python version of mantel test
metacycle
An integrated R package to evaluate periodicity in large scale data
metacycleapp
A web application for MetaCycle
metacyclev100
MetaCycle version 1.0.0
ncv
Evaluate clock robustness in population scale data
ncvapp
The shiny app for nCV package
ncvpy
The python version of nCV package
oslops
Combine the pipeline of CYCLOPS and Oscope for ordering human sampls
pathview
pathway based data integration and visualization
perlexamples
Several examples of perl scripts
preoslops
the revised CYCLOPS pipeline used for ordering human skin samples
rungsea
A shiny app of performing GSEA analysis using fgsea package
runwaveclock
This repository contains the demo files of running WaveClock
skinclockapp
This app shows time-series expression of five clock genes in epidermis samples collected from 19 subjects
skinphaserapp
SkinPhaser app
srbr_smtsarworkshop2016
Statistical Methods for Time Series Analysis of Rhythms Workshop in 2016 SRBR Meeting
srbr_smtsarworkshop2018
Statistical Methods for Time Series Analysis of Rhythms Workshop in 2018 SRBR Meeting
test
test git on different computers
twowayanova
Two-way ANOVA analysis example
vrfamilynet
vrFamilyNet
waveclock
Time-frequency analysis of cycling cell luminescence data (Tom Price's R package)
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