Comments (3)
Hi,
Some other user reported a similar problem. Maybe there was an update to the heatmap function we use in DROP. We are investigating it. You can, however, bypass it.
- In your project directory, go to:
Scripts/aberrant-splicing-pipeline/FRASER/Summary.R
. Comment out the for loop that starts in line 72 and ends in line 93, which is the one that plots the heatmaps. - It doesn't affect at all your results tables. It only affects the last html report.
- Simply rerun the aberrantSplicing rule with the
--rerun-triggers mtime
parameter
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Thanks @vyepez88 !
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Hi!
I have similiar issue and commenting out the for loop worked.
Thank you @vyepez88
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Related Issues (20)
- Annotation file asks for columns that shouldn't be needed HOT 2
- Error in rule AberrantSplicing_pipeline_Counting_01_1_countRNA_splitReads_samplewise_R HOT 10
- Pipeline fails with no significant results (AberrantSplicing_pipeline_FRASER_08_extract_results_FraseR_R) HOT 1
- Error in rule AberrantSplicing_pipeline_Counting_01_1_countRNA_splitReads_samplewise_R HOT 2
- Pipeline FAILS when specifying subsets of genes to test HOT 1
- useNames = NA is defunct HOT 4
- conda setup using yaml doesn't work HOT 1
- QUESTION: specifying samples for sampleExclusionMask in OUTRIDER HOT 2
- No Overview.html file after aberrantSplicing analysis with DROP v1.4.0 HOT 4
- Can't load fds-object from DROP in R HOT 2
- Results doubts HOT 2
- Error in checkForAndCreateDir HOT 5
- Safe way to rerun crashed pipeline HOT 8
- Error in rule AberrantExpression_pipeline_OUTRIDER_Summary_R HOT 1
- Error in Aberrant Expression Analysis with only external counts HOT 2
- Discrepancy between results_per_junction.tsv and results.tsv files
- How does DROP handle chrX expression HOT 1
- External dataset sequencing variability HOT 4
- Earlier crash for NA values in the SEX column HOT 4
- can't run mae module, error in GENOME column HOT 2
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