gabrielhoffman Goto Github PK

adjclust

Adjacency-constrained hierarchical clustering of a similarity matrix

adjclustfast

Fast adjacency clustering

cmc_analysis

cmc_analysis

cos_public_release

Public release of code for analysis of RNA-Seq data from COS cohort

covtools

Statistical Tools for Covariance Analysis

crumblr

Count ratio uncertainty modeling base linear regression

crumblr_analysis

Analysis using crumblr

decorate

Differential Epigenetic Correlation Test

decorate_analysis

decorrelate_analysis

Analysis code for decor relate

deepfigv_encoding

deepfigv_encoding

dream_analysis

Simulation and data analysis code for dream paper

dreamlet

Perform differential expression analysis on multi-sample single cell datasets using linear mixed models

dreamlet_analysis

Analysis code and results for dreamlet

faststudentt

Fast implementation to estimate parameters of Student t distribution for large datasets

gabrielhoffman.github.io

genomelake

Simple and efficient access to genomic data for deep learning models.

heivr_analysis

Data analysis with heivr package

hpc_disk_usage

Scripts to add up disk usage

imputez

Impute z-statistics for missing tests using observed z-statistics and the correlation matrix between z-statistics

logistic_regresion_for_gde

lrgpr

Fit a Low Rank Gaussian Process Regression (LRGPR) / Linear Mixed Model (LMM) for large datasets

microglia_analysis

misc_tfbs_enrichment

misc_TFBS_enrichment

misc_vp

Variance partitioning for logistic regression

mmqtl

mmQTL

muscat

Multi-sample multi-group scRNA-seq analysis tools

muscat-comparison

muscat-comparison_v2

Muscat comparison - v2

mvic

Evaluate BIC for multivariate regression to enable model selection with multiple response variables