Dr. Fan Zhang's Projects
I helped to develop a workshop about RNA-Seq data analysis on Linux cluster environment, 2016.
Kallisto, gene quantification, QC, PCA and related
We wrote a getting-started file for reproducible research in computational science (computational biology).
Personal website of Fan Zhang
:butterfly: Zhang, et al, 2019. A global optimization algorithm for a sparse mixed-membership matrix factorization problem for molecular subtypes classification.
This work is published in the journal of Bioinformatics, 2015. It is a novel Bayesian model for rare variant detection in NGS data.
I am working on a review paper.
:whale: He, Y., Zhang, F., and Flaherty, P, Bioinformatics, 2015. The source code and command line interface for rare variant detection in NGS data is downloaded here.
:dolphin: Fan Zhang, et al, 2017. BMC Bioinformatics. A variational Bayesian model to identify rare variants in heterogeneous NGS clinical samples.