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Felix Vaux's Projects

deacon_rockfish_radseq icon deacon_rockfish_radseq

Commands and input files for population genetic analysis of Deacon Rockfish using RADseq. Used for: Vaux F, Rasmuson LK, Kautzi LA, Rankin PS, Blume MTO, Lawrence KA, Bohn S, O’Malley KG. (2019). Sex matters: otolith shape and genomic variation in deacon rockfish (Sebastes diaconus). Ecology and Evolution 9(23), 13153-13173.

kaikoura_d_antarctica_gbs icon kaikoura_d_antarctica_gbs

Commands and input files for the phylogeographic analysis of southern bull kelp Durvillaea antarctica using genotyping-by-sequencing data.

metagenomics_summer_school icon metagenomics_summer_school

Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December

microbiome_helper icon microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

north_island_d_poha_gbs icon north_island_d_poha_gbs

Commands and input files for the population genetic and phylogenetic analysis of southern bull kelp Durvillaea poha using GBS. Used for: Vaux F, Craw D, Fraser CI, Waters JM. (2021). Northward range extension for Durvillaea poha bull kelp: response to tectonic disturbance? Journal of Phycology 57(5), 1411-1418.

pacific_albacore_ddradseq icon pacific_albacore_ddradseq

Commands and input files for population genetic analysis of Pacific Albacore using ddRADseq. Used for: Vaux F, Bohn S, Hyde JR, O'Malley KGO. (2021). Adaptive markers distinguish North and South Pacific Albacore amid low population differentiation. Evolutionary Applications 14(5), 1343-1364.

phd_morphometrics icon phd_morphometrics

R scripts for geometric morphometric analyses conducted on buccinoid true whelk shells (Aeneator, Antarctoneptunea, Kelletia, Penion) and tuatara dentary bones

turakirae_d_antarctica_gbs icon turakirae_d_antarctica_gbs

Commands and input files for the phylogeographic analysis of southern bull kelp Durvillaea antarctica using genotyping-by-sequencing data. Used for: Vaux F, Craw D, Fraser CI, Waters JM. Parallel recolonisations generate distinct genomic sectors in kelp following high magnitude earthquake disturbance. Molecular Ecology (accepted)

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