Comments (1)
In the paper, we use DeepMSA to generate aln
format file. This would work well for most query sequences. If DeepMSA doesn't work for you, i.e. generates few homologue proteins, you could search against BFD using hhblits and MGnify using HMMER.
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Related Issues (6)
- how to 'Generate aln format MSA for a given target sequence' from a file in '.fasta' format? HOT 1
- Constructing fitness landscape using CopulaNet HOT 2
- CBCB: Did you consider only Carbon Beta atom while predicting distance map ? HOT 3
- training model HOT 3
- The output of encoder (context-specific mutation for each residue)
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