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dalliance

Interactive web-based genome browser.

deepark

Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning

diseasequest-docker

expecto

predicting expression effects of human genome variants ab initio from sequence

find_scripts

Code for training ontology-based CRF model for tissue-developmental stage-specific gene prediction

find_website_network

shiny app for FIND network visualization

flib

fntm-api

Template code and documentation for FNTM API

function

Python library for functional genomics

giant-api

RESTful API for Functional Genomics

giant-api-biojs

BioJS connector for GIANT

heartenn-models

Documentation and scripts to run HeartENN (Richter et al., 2020)

ketl

konfigurable etl

onboarding

Information for new Troyanskaya lab members

sei-framework

code to run sei and obtain sei and sequence class predictions

sei-manuscript

Code for reproducing the Sei manuscript results

selene

a framework for training sequence-level deep learning networks

sleipnir

speedi

Single-cell Pipeline for End to End Data Integration (SPEEDI)

tapioca

a framework for predicting global protein-protein interaction networks from dynamic mass spec data

yenta

Yet 'Nother Taskrunner