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ann_ga_prototype

Prototype for a recurrent artificial neural network that can be evolved by a genetic algorithm.

bwa

Burrow-Wheeler Aligner

emscripten

Emscripten: An LLVM-to-JavaScript Compiler

emscripten_experimentation

learning to use emscripten

exhet_supplement

Example script and simulation data to use the Truong and McCormick et al. 2014 variable heterozygosity model.

fftw_testing

Learning how to use FFTW

gatk

GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses

gatk-protected

GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

libfreenect2

Open source drivers for the Kinect for Windows v2 device

proceduralgenerationprototyping

Playing around with procedural generation

proto

pythoncapi_testing

Trying to embed Python within C++

qtl

R/qtl: A QTL mapping environment

realtime-multiplayer-in-html5

Read the full article: http://buildnewgames.com/real-time-multiplayer/ An example using node.js, socket.io and HTML5 Canvas to explain and demonstrate realtime multiplayer games in the browser.

rig

An implementation of the RIG workflow

sdl2_tigerjump

Playing with SDL2 to draw images to screen and take keyboard input

sorghumreconstructionandphenotyping

Program to reconstruct sorghum plants from depth images and make measurements of the reconstruction

stackstovcf

Obtain VCF from Stacks database

te_stats

Python script(s) to calculate and plot transposable element annotations in GFF3 files, specifically generated by TEdenovo and TEannot outputs (Flutre et al., 2011; https://urgi.versailles.inra.fr/Tools/REPET)

wgsim

Reads simulator