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acnviewer

Comprehensive genome-wide visualization of absolute copy number and copy neutral variations

aehrensache

#WirvsVirus

airrflow

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

auto-wave

awsmegatests

CloudFormation templates to setup the aws megatests necessary cloud infrastructure

babysarek

bioconda-recipes

Conda recipes for the bioconda channel.

bioicons

A library of free open source icons for science illustrations in biology and chemistry

clipseq

CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

configs

Config files used to define parameters specific to compute environments at different Institutions

createpanelofnormals

Create panel of normals for Mutect2

data-model-lib

Libraries providing functionality for the QBiC/openBIS data model

dmqb

dualrnaseq

Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.

evaluate-nf-execution-metrics

freec2gistic

Workflow: Convert CONTROL-freec output to GISTIC2

friederikehanssen

friederikehanssen.github.io

hicar

Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.

intersectvcfs

Intersects Strelka2 and Mutect2 VCF files

intothegenomics

Scripts described in intothegenomics.com

mag

Assembly and binning of metagenomes

mastodon-bioinformatics

Most simple webapp to bulk follow bioinformatics accounts on Mastodon.

minion2015

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-package-containers

Testing building mulled containers for multi-requirement tools.

ncbench-workflow

nf-co.re

Code and files for the main nf-core website.

nf-wrap-main

Nextflow wrapper built around nf-core/modules

openbis-client-lib