Comments (1)
I'm wondering if the Error: basic_string::substr is result of some whitespace or a formatting error in my input assembly.fasta file. I'm using Trinity to assembly the contigs and the fasta headers are not compatible with Annocript. I used the following command to change the headers:
sed -e 's/\len=//' -e 's/\path.*// Trinity_assembly.txt > Trinity.fasta
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