fowler-lab Goto Github PK

amygda

Automated Mycobacterial Growth Detection Algorithm, funded by NIHR Oxford Biomedical Research Centre

bashthebug

bashthebug-consensus-dataset

Dataset of classifications made by BashTheBug volunteers used to decide how to form a consensus

cryptic-ecoffs

Data and code to reproduce the figures and tables in the CRyPTIC ECOFF/ECV paper

inh_resistance

jupyter-notebook-example

A prototype jupyter notebook

molstar-mutation

A comprehensive macromolecular library adapted for visualisation of protein mutations

predict-pyrazinamide-resistance

protein-mutation-viewer

pyniverse

generic Python package for parsing, analysing and plotting Zooniverse data classification export files

sbmlcore

Collection of core classes and functions for structure-based machine learning to predict antimicrobial resistance

sbmlcore-tutorials

seqtreat

Python code to validate the spreadsheets containing M. tuberculosis AST data donated to the project. Likely to expand in future.

tb-bdq-cat

tb-lineage-mutations

Reference list of lineage-defining mutations as derived from SNP-IT

tb-rbfe-setup

Files and scripts to rerun A90V DNAG and S450L RBFE calculations

tb-rnap-compensation

Investigation of the role of compensatory mutations in rifamycin resistance in M. tuberculosis

who_catalogue_conversion

Convert mutations from the WHO TB catalogue to GARC