Comments (2)
Additional problem:
* creating vignettes ... ERROR
[21](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:22)
Error: --- re-building ‘DHARMa.Rmd’ using rmarkdown
[22](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:23)
Warning in system2(..., stdout = if (use_file_stdout()) f1 else FALSE, stderr = f2) :
[23](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:24)
error in running command
[24](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:25)
! sh: pdflatex: command not found
[25](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:26)
Error: Error: processing vignette 'DHARMa.Rmd' failed with diagnostics:
[26](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:27)
LaTeX failed to compile /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/RtmpSQGXTu/Rbuildb3f12e0afe39/DHARMa/vignettes/DHARMa.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See DHARMa.log for more info.
[27](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:28)
--- failed re-building ‘DHARMa.Rmd’
[28](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:29)
--- re-building ‘DHARMaForBayesians.Rmd’ using rmarkdown
[29](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:30)
--- finished re-building ‘DHARMaForBayesians.Rmd’
[30](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:31)
SUMMARY: processing the following file failed:
[31](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:32)
‘DHARMa.Rmd’
[32](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:33)
Error: Error: Vignette re-building failed.
[33](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:34)
Execution halted
[34](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:35)
Error: Error in proc$get_built_file() : Build process failed
[35](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:36)
Calls: <Anonymous> ... build_package -> with_envvar -> force -> <Anonymous>
[36](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:37)
Execution halted
[37](https://github.com/florianhartig/DHARMa/actions/runs/4026897407/jobs/6921966834#step:9:38)
Error: Process completed with exit code 1.
from dharma.
OK, it seems what did the trick to solve the problem with building the vignette was adding
- uses: r-lib/actions/setup-tinytex@v2
- run: tlmgr --version
The actions are now also updated!
- uses: actions/checkout@v3
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
- uses: r-lib/actions/setup-pandoc@v2
from dharma.
Related Issues (20)
- Im getting significant deviations in KS tests for a glmm with guassian distribution HOT 1
- Detection of outliers before implementing binomial test for continuous response variable HOT 2
- Test spatial autocorrelation error: Dimensions of x / y coordinates don't match the dimension of the residuals HOT 4
- Dealing with non-uniform residuals in y-direction when plotted against predictor(s) HOT 2
- testDispersion() default fails to detect overdispersion in a Poisson GLMM HOT 4
- Question about using DHARMa for Bernoulli Response Data
- Add support for nls
- Diagnostic plots for model using glmmTMB and Beta distibution HOT 6
- could not find function "ensureDHARMa"
- plotResiduals() falls back to predict and doesn't create a warning if variable doesn't exist
- Implement option to use DHARMa plots on general residual definition (bypassing simulation)
- Power of the KS test HOT 1
- How to resolve the residual versus predicted quantile devation (Dharma plot)?
- Could not find documentation on red-shaded area around smooth spline HOT 2
- Pattern in RE-grouped residual for binomial GLMM HOT 2
- Adjust DHARMa plots for color blindness
- DHARMa: fittedModel not in class of supported models for a glmmTMB model HOT 3
- Dispersion calculations for mdcv tweedie distribution HOT 1
- Clarify dispersion tests
- Extracted Pearson residuals wrong for mccv (type should be "scaled.pearson")
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from dharma.