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3dmorph

3DMorph is a MATLAB-based script that analyzes microglia morphology from 3D data. Outputs include cell and territorial volume, branch length, and number of branch and end points.

bci

Gui for electrophysiology data acquisition and visualization

celestina

A graphical tool for the qualitative analysis of the merge operation in Wave_clus

cellexplorer

CellExplorer is a graphical user interface (GUI) and standardized pipeline for exploring and characterizing single cells acquired with extracellular electrodes

clase_wavelets

Clase introductoria sobre wavelets en Matlab

combinato

Automatic spike sorting, cluster visualization, spike sorting GUIs

cx_lfp

LFP viewer and analyzer using cbmex, the Matlab Interfaces for Blackrock Microsystems Data Acquisition Systems

ferchaure.github.io

My personal webpage

finta

Common financial technical indicators implemented in Pandas.

isosplit5

ISO-SPLIT clustering (stand-alone version)

isosplit5_python

kilosort

GPU code for spike sorting

matlab_stuff

A few commands and useful tools that I use when I work in Matlab.

mclust-spike-sorting-toolbox

MClust is a Matlab-based spike sorting toolbox for the separation of putative cells from multi-site neurophysiological recordings. It is particularly good for tetrodes.

ml_ephys

Electrophysiology tools, mountainlab processor library

ml_ms4alg

MountainSort v4

npmk

Neural Processing Matlab Kit is a set of functions for loading and manipulating data from Blackrock Microsystems' data files (.CCF, .NEV, .NSx).

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

psychtoolbox-3

Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU Octave functions for vision and neuroscience research.

python-neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

spc

Python package and wrapper for the Super Paramagnetic Clustering algorithm

spike-sorting-hackathon

spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

spikeinterface-gui

GUI for spikeinterface objects

spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

spiketoolkit

Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.

the_r_programming_environment

tridesclous

offline/online spike sorting. Un logiciel de gauche qui ne fait pas d'amalgame entre la classe et la coquetterie.