fbergmann Goto Github PK
Name: Frank Bergmann
Type: User
Company: Heidelberg University
Location: Heidelberg
Frank Bergmann's Projects
3dsimulate
three dimensional simulation of SBML models
amici
Advanced Multilanguage Interface to CVODES and IDAS
assigncopasiresults
Generate COPASI models from partial fit
auto-sbml
Basic tool using AUTO & RoadRunner to analyze SBML models
benchmark-models
A collection of ODE models with experimental data as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
bifurcation-discovery
SBW Bifurcation Discovery tool, reimplemented in C#
bioconda-recipes
Conda recipes for the bioconda channel.
biosimulations_copasi
COPASI Simulator for BioSimulations
combinearchive
Libraries and Tools for accessing the COMBINE archive
conan-clapack
conan recipe for using clapack
conan-copasi
conan recipe for COPASI
conan-crossguid
conan recipe for crossguid
conan-libcombine
conan recipe for libCombine
conan-libnuml
Conan recepie for libnuml
conan-libsbml
Conan build recipe for libSBML
conan-libsedml
conan recipe for libSEDML
conan-raptor
conan recipe for raptor
conan-zipper
conan recipe for libZipper
copasi2sedml
Converts a COPASI file to SED-ML L1V1
corc
The Copasi R connector, a high-level R API for Copasi
csdeviser
Graphical User Interface for editing SBML Extension drafts
datasciencecoursera
example repo
datasharing
The Leek group guide to data sharing
deviser
Design Explorer and Viewer for Iterative SBML Enhancement of Representations
dsmts
Discrete stochastic models test suite
dune-test
Basic Reaction Diffusion Equation solved in DUNE
edit-spatial
Basic Editor for Models using the SBML Spatial Package
exdata_plotting1
Plotting Assignment 1 for Exploratory Data Analysis
fba_perturbation
a toolbox to perturb FBA flux distribution in constraint-based metabolic networks
fbc_curation
FROG analysis in python for the reproducibility of FBC models
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