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Hi there šŸ‘‹

  • šŸ”­ Iā€™m currently working on Machine Learning for Bioinformatics Research and High Throughput Phenotyping
  • šŸŒ± Iā€™m currently learning PyTorch
  • šŸ‘Æ Iā€™m looking to collaborate on Deep Learning for various Image Analysis tasks
  • šŸ¤” Iā€™m looking for help with labelling šŸ«

My Current Projects

  • Non-destructive evaluation of Poultry Tissue mass
  • Peatland Restoration using GIS and Deep Learning
  • Peatland Drainage Mapping using GIS and Deep Learning
  • Estimating Genotypic traits using Hyperspectral Imaging
  • Soft Fruit yield prediction with MaskRCNN/Detectron
  • Barley yield estimation and biodiversity monitoring from UAV imagery
  • Disease detection and forecasting
  • Hyperspectral Image Analysis Python Package for Crop Research

Previous Work

  • Coded aperture spectral compressed sensing simulations
  • Development of efficient spatio-spectral target detection frameworks for aerial and satellite Imaging
  • Extension of the Morphological Hit-or-Miss Transform for use in Hyperspectral Imagery
  • Development of a hyperspectral crop camera for disease detection in agriculture
  • Non-destructive evaluation of graphite fuel channels

More on my github pages website - https://f-macfarlane95.github.io/

Python Tensorflow Keras Pytorch Scipy MATLAB C++ LaTeX Jupyter Colab QGIS ImageJ Pandas Numpy Numba CUDA Conda Bash Git

SQL DBeaver

Fraser Macfarlane's Projects

blur_detection icon blur_detection

Blurred Region Detection using Singular Value Decomposition (SVD)

hpc-help icon hpc-help

Help documentation for https://help.cropdiversity.ac.uk

imagedataaugmentor icon imagedataaugmentor

Custom image data generator for TF Keras that supports the modern augmentation module albumentations

jhi-phenotyper icon jhi-phenotyper

Phenotyper: a python package for analysing high throughput image-based phenotyping.

labelme icon labelme

Image Polygonal Annotation with Python (polygon, rectangle, circle, line, point and image-level flag annotation).

labelme2coco icon labelme2coco

How to create custom COCO data set for instance segmentation

mapreader icon mapreader

A computer vision pipeline for exploring and analyzing images at scale

mask_rcnn-tf2 icon mask_rcnn-tf2

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

sample-data icon sample-data

Sample data files used in the SPy web site and documentation.

spectral icon spectral

Python module for hyperspectral image processing

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