Display ideogramTrackLabel in the geometry/collinear live example about ideogram HOT 6 OPEN

Hi @Mickind, could you attach your annotations data, and post your Ideogram configuration object? That would help diagnose the issue.

from ideogram.

Hi @eweitz, Thanks for the reply.

I am using the following Ideogram Configuration Object:

config() {
   return {
           organism: 'human',
           orientation: 'horizontal',
           geometry: 'collinear',
           container: '#ideogram',
           sex: this.sex,
           assembly: "GRCh37",
           chrHeight: 100,
           chrMargin: 10,
           legend: this.legend,
           annotationHeight: 60,
           rotatable: false,
           annotationsLayout: 'heatmap',
           annotations:  this.dataIdeogram
         }
}

The this.dataIdeogram variable contains exactly the json that I am attaching to you.

annotationsData.txt

Thanks so much @eweitz !

from ideogram.

Hi @eweitz, could you kindly tell me if you have updates on the issue?
Thank you very much!

from ideogram.

@Mickind, no updates yet, unfortunately. My time on Ideogram for the past several months has been filled by improving the related genes kit, e.g. via Homology.js and Gene Hints.

Thanks for your diagnostic information -- it will help anyone who works to resolve this, and I welcome help on this issue.

Would you mind if I asked where you are using Ideogram?

from ideogram.

Would you mind if I asked where you are using Ideogram?

We are working, with my work team, on a personalised healthcare research project involving the use of genomic and expression data. In order to allow the doctor to view this type of data in the medical record we are creating, ideogram is the best viewer we have found. The data we have sent to you are test (fake) data and do not correspond to real patient data.

Anyway, I hope that the issue will be resolved and I thank anyone who wants to help us. Thanks @eweitz !

from ideogram.

Hi, I'm a colleague of @Mickind. After struggling with this for a while, I found a workaround. It consists of assigning the annotations object to the annotationsPath property instead of annotations, pretending it's a file by using:

annotationsPath: URL.createObjectURL(new Blob([JSON.stringify(this.ideogramData)], {type: "application/json;charset=utf-8"})); (VueJS code here)

Doing so the labels are displayed, anyway the browser shows an annoying alert claiming that the file extension (there isn't any in the generated URL) is not one of the allowed ones.
To avoid it I commented out var extension = validateAnnotsUrl(annotsUrl); in annotations.js (line 213).
I know this is not the best solution (pretty abrupt actually), but it allowed us to solve the problem.

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