Comments (1)
@algarsi3, yes, you can depict custom genomes with Ideogram.js. For example:
- Install Ideogram.js locally
- Copy the linked file
example-organism.js.txt
intoideogram/dist/data/bands/native/
- Rename
example-organism.js.txt
toexample-organism.js
- Load http://localhost/ideogram/examples/vanilla/eukaryotes?org=example-organism
There you should see a custom genome -- the rice (Oryza sativa) genome with a custom chromosome 13 (chr12 with a longer pericentromeric region on the p-arm) that does not exist in the reference rice genome assembly.
I could see such use cases being helpful for visualizing genomes before they are deposited in biological databases, e.g. as a tool for quality assurance.
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Related Issues (20)
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