Code Monkey home page Code Monkey logo

Comments (2)

colejensen avatar colejensen commented on June 23, 2024

I have been using baltic 0.1.1 and if I use bt.loadJSON() as previously used in 0.1.0 I get an error regarding the metadata. For an example of when this happens:
nx_tree = json.load(open(path, 'r')) tree = nx_tree['tree'] # tree data meta = nx_tree['meta'] # metadata json_translation={'absoluteTime':lambda k: k.traits['node_attrs']['num_date']['value'],'name':'name'} json_meta={'file':meta,'traitName':'region'} bt_tree=bt.loadJSON(tree,json_translation,json_meta)
which results in the following error:

Traceback (most recent call last):
File "C:/Users/28Cha/AppData/Roaming/JetBrains/PyCharmCE2020.2/scratches/scratch_7.py", line 39, in
bt_tree=bt.loadJSON(tree,json_translation,json_meta) ## give loadJSON the name of the tree file, the translation dictionary and (optionally) the meta file
File "C:\Users\28Cha\Documents\Python\venv\lib\site-packages\baltic\baltic.py", line 1288, in loadJSON
json_meta=auspice_json['meta']
KeyError: 'meta'

If I run the bt_tree=bt.loadJSON(nx_tree,json_translation,json_meta) it runs, but becomes a tuple, which makes it hard to work with.

from baltic.

evogytis avatar evogytis commented on June 23, 2024

Hi Cole,

I believe the issue you're having has to do with the outdated notebooks on here. Up until a few months ago auspice JSONs came in at least two parts - a meta and a tree file which were then merged into a single JSON file (v2 auspice JSON format). The loadJSON function assumes you're giving it the new v2 auspice JSON that includes both tree and meta parts in a single JSON and after parsing spits them out as separate entities (baltic tree object and meta dictionary, hence the tuple) because there's information in the meta part that wouldn't make sense as part of the baltic tree object. You can simply unpack these in your function call like this:

bt_tree,meta=bt.loadJSON(nx_tree,json_translation,json_meta)

from baltic.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.