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chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

cowplot

cowplot: Streamlined Plot Theme and Plot Annotations for 'ggplot2'

gametagwas

meta-analysis of GWAS results (GestAge, maternal)

gemma-gwas-scripts

A collection of scripts to aid mixed linear model based GWAS with GEMMA (https://github.com/genetics-statistics/GEMMA)

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

gwar

A package for GWA from GBLUP models

gwas-metaanalysis

An application for performing meta-analysis comparison of a given gene set to detect disease traits and drug interactions.

gwas_gemma

Perform GWAS with gemma in a simple pipeline

gwas_pipelines

Instructions and helpful R code for Running GEMMA and GAPIT

gwas_scripts

Codebook from my GWAS cookbook

gwasanalytics

Gwasanalytics consists of a series of scripts that will analyze Gwas Catalog phenotypes and the input bed file from e.g. ChIP-Seq/ATAC-Seq experiment. Gwasanalytics scripts will calculate standard and modified binomial statistics, p-values and fold change for genomic overlaps between the input and various parsed GWAS categories.

gwasdataanalysis

Functions to extract data from GWAS studies and optimize analysis of the GWAS catalog.

gwasmetaanalysis

Scripts for common methods of GWAS meta anlaysis

labs

Rmd source files for the HarvardX series PH525x

linuxunix

2 reports (GWAS & ChIP-seq) and an automated ChIP-seq analysis

molgenis-pipelines

Pipelines for NGS, imputation, gwas, ...

r-cmplot

:four_leaf_clover:Circular Manhattan Plot

r_bilibili

reveal.js

The HTML Presentation Framework

the-art-of-command-line

Master the command line, in one page

uk_biobank_gwas

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release