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batch_centroid

Utility functions to perform batch centroiding of profile mzML files using MSnbase

biocresort

Resorting a Biocrates injection list for Sciex machines

chris_plasma_proteome

General data analysis of the ScanningSWATH mass spectrometry-based plasma proteomics data of CHRIS.

clickmaster2000

A tally counter for images

compmetabotools

Utility functions frequently used in analyses of the Computational Metabolomics Team

digitalspiralography

Digital Spiralography

end-to-end-untargeted-metabolomics

A simple end-to-end untargeted metabolomics analysis workflow

famagg

This is the development version of the FamAgg Bioconductor package.

finemap_pipeline

ifb_bioconductor_docker

Docker containers based on Bioconductor's docker with additional software used by the Institute for Biomedicine (IfB) from Eurac Research.

isotopologues

lcms-standards

Measurements of standard compounds in LC/MS setups and configurations at Eurac Research

metabo_chris_untargeted

Repository for the pre-processing of the untargeted metabolomics data from CHRIS

microbiome

The idea is that here you can find useful scripts and other documentation to process microbiome data

mitra_short_term_stability

HILIC-based untargeted metabolomics experiment to evaluate short-term stability of Neoteryx Mitra blood microsamples.

mr.inflpd

mrmprocessing

some automated functions for MRM mass spectrometry data processing

myrpkg

My first R package trying to use git version control

personal_r_functions

Some useful functions to study microbiome in the context of a population study

prs_pipeline

Pipeline for PRS computation integrating diverse PRS algorithms into a unique Snakemake workflow.

rescueomr

batch Optical Mark Recognition without foresight

rvtests

Rare variant test software for next generation sequencing data

shinylocuszoom

smhplot

Sparkling Manhattan Plot

tblutils

Text-based Table Utilities

tecanfluentworklists

Scripts used for generating worklists for the Tecan Fluent based on data generated via the incredible liquid level detection

tidyfr

R interface to retrieve CHRIS data.

trainckdis.mr

Repository for the MR session material of the TrainCKDis Summer School 2021

vams_vs_intraveinous

Comparison of Volumetric Absorbtive Microsampling to venous blood sampling