Comments (4)
I think this is a regression in the latest release that crept in when I moved the backend from numpy to pandas. I'll see about fixing it. There should really be unit tests for these edge cases, too.
from cnvkit.
It should work now; can you confirm?
from cnvkit.
Thanks Eric, let me try!
from cnvkit.
Yep seems to be working cleanly now, thanks for the super quick fix Eric!
from cnvkit.
Related Issues (20)
- cnvkit for multiple wgs cohort
- cnvkit.py export bed
- What's the mean of CN column?
- What format is the input bam file?
- what are the steps for Germline and Somatic CNV detection using CNVkit?
- Adding gene diagram to heat map
- Smoothing window fraction fix results in noisier data in targeted sequencing panel? HOT 1
- TypeError: batch_run_sample() takes from 16 to 17 positional arguments but 18 were given HOT 1
- sex allocation incorrect for males; antitarget used over target
- Best practices for creating a WGS pooled reference
- Need Help with generating Gene level Copy Number Ratio HOT 1
- pysam.idxstats
- cnvkit.py batch hangs on very large WGS dataset
- Runtime Error Using CNVKit Batch HOT 1
- Allow using reference fasta with reference cnn in cnvkit batch when processing crams HOT 1
- Issue in running cnvkit.py diagram command HOT 2
- Why are the log2 values of the chrX in the female reference I constructed mostly around 1?
- dockerhub link is dead (typo) HOT 1
- CNVkit batch issue HOT 2
- Next release? HOT 10
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cnvkit.