Comments (17)
smjenness
commented on July 20, 2024
1
I was thinking somewhere on this readme: https://github.com/statnet/computing/tree/master/build
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AdrienLeGuillou
commented on July 20, 2024
as we discussed, I changed
#!/bin/bash
. /gscratch/csde/spack/spack/share/spack/setup-env.sh
module load r-4.0.0-gcc-9.2.0-p7wezulto
#!/bin/bash
. /gscratch/csde/spack/spack/share/spack/setup-env.sh
spack load [email protected]and it gives me the following error:
==> Error: No compilers for operating system centos7 satisfy spec [email protected]
is there something I am doing differently than you?
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smjenness
commented on July 20, 2024
Hmm... no I think it is the same. After you run setup-env can you do: spack find and report the results here.
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AdrienLeGuillou
commented on July 20, 2024
I get this:
[aleguil@mox1 ~]$ . /gscratch/csde/spack/spack/share/spack/setup-env.sh
[aleguil@mox1 ~]$ spack find
==> 170 installed packages
-- linux-centos7-broadwell / [email protected] --------------------------
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected]
[email protected] [email protected] [email protected]
-- linux-centos7-haswell / [email protected] ----------------------------
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] lua-luafilesystem@1_7_0_2 [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] [email protected] [email protected] [email protected]
[email protected] is present but I still get the error
==> Error: No compilers for operating system centos7 satisfy spec [email protected]
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smjenness
commented on July 20, 2024
Can you restart your session, load spack, and then run spack compiler find. Then try spack load
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AdrienLeGuillou
commented on July 20, 2024
[aleguil@mox1 ~]$ . /gscratch/csde/spack/spack/share/spack/setup-env.sh
[aleguil@mox1 ~]$ spack compiler find
==> Found no new compilers
==> Compilers are defined in the following files:
/usr/lusers/aleguil/.spack/linux/compilers.yaml
[aleguil@mox1 ~]$ spack load [email protected]
==> Error: No compilers for operating system centos7 satisfy spec [email protected]
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smjenness
commented on July 20, 2024
what do you have listed here: ~/.spack/linux/compilers.yaml
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AdrienLeGuillou
commented on July 20, 2024
I was actually looking into it:
compilers:
- compiler:
paths:
cc: /usr/bin/gcc
cxx: /usr/bin/g++
f77: /usr/bin/gfortran
fc: /usr/bin/gfortran
operating_system: centos7
target: x86_64
modules: []
environment:
unset: []
extra_rpaths: []
flags: {}
spec: [email protected]
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smjenness
commented on July 20, 2024
ok try this: spack load [email protected], spack compiler find (this should add 9.2.0 to your .yaml), restart session, load spack, spack load [email protected]
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AdrienLeGuillou
commented on July 20, 2024
does not work either.
[aleguil@mox1 linux]$ spack load [email protected]
[aleguil@mox1 linux]$ spack load [email protected]
==> Error: No compilers for operating system centos7 satisfy spec [email protected]
I think I need to do
spack find <path to gcc 9.2>
to register it
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smjenness
commented on July 20, 2024
wait, did you do spack compiler find after spack load [email protected]?
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AdrienLeGuillou
commented on July 20, 2024
no, just spack load [email protected]
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smjenness
commented on July 20, 2024
try this sequence, as suggested above:
spack load [email protected], spack compiler find (this should add 9.2.0 to your .yaml), restart session, load spack, spack load [email protected]
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AdrienLeGuillou
commented on July 20, 2024
my bad, I read to fast.
It worked this time.
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smjenness
commented on July 20, 2024
excellent, can you add this step to any instructions on statnet/computing?
I had it listed here, but this is out of date, and pertains to building GCC and R (mostly for me): https://github.com/statnet/computing/wiki/Build-Hyak-Stack-from-Scratch-with-Spack
anything that lists using spack load needs to include this step of updating the compiler yaml with spack compiler find
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AdrienLeGuillou
commented on July 20, 2024
On it, where on the repo do you want me to put that info?
- wiki? Build-Hyak-Stack-from-Scratch-with-Spack?
- reproducible env readme?
- other
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AdrienLeGuillou
commented on July 20, 2024
I updated the "loadR.sh" file in "build" and added an explanation on how to correct the missing compiler error.
I also modified the "reproducible env" README saying that "loadR.sh" should be copied in the project's folder. I made linked to the "build" README so the user can know where to look
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